sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2VQE-A788-A789
X
>3U5F-61273-61274
X
>3OGE-A1379-A1380
X
>3OHD-A601-A602
X
>1VQ7-02670-02671
X
>3G6E-02598-02599
X
>1I9V-A73-A74
X
>1YHQ-02598-02599
X
>1FFK-02550-02551
X
</seq>
<hsp>
0 1:0.615632486156
0 2:0.667798644808
0 3:0.405843688921
0 4:0.413929626178
0 5:0.899669419925
0 6:0.623451137513
0 7:0.871415520137
0 8:0.874977877121
1 2:0.934365025075
1 3:0.745683720697
1 4:0.737952644061
1 5:0.434469364033
1 6:0.467091766227
1 7:0.398633778308
1 8:0.446617648472
2 3:0.768517359315
2 4:0.527744565797
2 5:0.974682511441
2 6:0.838029218171
2 7:0.958115665862
2 8:0.953698680488
3 4:0.708591245496
3 5:1.0
3 6:0.737034743211
3 7:0.952875407491
3 8:0.928309170858
4 5:0.930012652447
4 6:0.63648323885
4 7:0.89768273248
4 8:0.918358493849
5 6:0.534318938688
5 7:0.143058111326
5 8:0.221938662134
6 7:0.48502213127
6 8:0.460573584144
7 8:0.12487643558
</hsp>