sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1YIJ-0232-0233
X
>3CCQ-0232-0233
X
>3LOA-A6-A7
X
>2OTJ-01846-01847
X
>3CCR-01846-01847
X
>3OH5-A2554-A2555
X
>3CCV-01846-01847
X
>3G6E-01846-01847
X
>1VQ7-01846-01847
X
</seq>
<hsp>
0 1:0.196899126652
0 2:0.999998837791
0 3:0.648809193756
0 4:0.679239157987
0 5:0.371228611836
0 6:0.656617444237
0 7:0.657533823874
0 8:0.663567288766
1 2:0.898352912346
1 3:0.55341982491
1 4:0.647006438018
1 5:0.296575792278
1 6:0.594936518602
1 7:0.568301337216
1 8:0.584882935537
2 3:0.603586069653
2 4:0.677063327319
2 5:0.754975803647
2 6:0.59606204205
2 7:0.522563657057
2 8:0.437367848499
3 4:0.326630497746
3 5:0.305548859007
3 6:0.205805780692
3 7:0.125422234899
3 8:0.245600917188
4 5:0.400912586789
4 6:0.171459834603
4 7:0.293726757029
4 8:0.305690836349
5 6:0.341030668737
5 7:0.329422251614
5 8:0.365474185837
6 7:0.142248858177
6 8:0.204036608603
7 8:0.150325163449
</hsp>