sequences=7
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3KNH-W25-W26
X
>3CC4-02750-02751
X
>1VQN-0683-0684
X
>3CCR-0683-0684
X
>3CCV-0683-0684
X
>3CCJ-01221-01222
X
>3G71-0683-0684
X
</seq>
<hsp>
0 1:0.984510130441
0 2:0.896560691264
0 3:1.0
0 4:0.961152525064
0 5:0.873303525604
0 6:0.918054617897
1 2:0.341641023561
1 3:0.637468439891
1 4:0.424743185704
1 5:0.484524493078
1 6:0.547344613404
2 3:0.336570437421
2 4:0.22343112762
2 5:0.375140023304
2 6:0.328524963509
3 4:0.298066204728
3 5:0.57450531152
3 6:0.313254936737
4 5:0.458987680195
4 6:0.22455598008
5 6:0.378052938269
</hsp>