sequences=6
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1FFK-01124-01125
X
>6TNA-A73-A74
X
>1YIT-01171-01172
X
>3CC4-940-941
X
>3OHD-A991-A992
X
>3OI0-A375-A376
X
</seq>
<hsp>
0 1:0.189873433356
0 2:0.244438365046
0 3:0.393934134827
0 4:0.562242322393
0 5:0.999995761392
1 2:0.320667117651
1 3:0.459297281828
1 4:0.549916653275
1 5:0.997129490853
2 3:0.444419537229
2 4:0.59217106813
2 5:0.94809422057
3 4:0.413414208654
3 5:0.801126649385
4 5:0.532083084932
</hsp>