ClaRNA

Doublet Group info: classifier/stacking/>>/CG/sub-004

distance statistics     members distance graph (clans)     superimpose     cluster

Details

N. type: None
Program used: None
Category: classifier
SubCategory: stacking
Desc: >>/CG/sub-004
Members:
count: 42
download members
3OIJ:C9:C10
2QA4:01519:01520
3CCQ:0439:0440
1VQ5:01708:01709
3EPH:F53:F54
3I56:01359:01360
1QVG:0439:0440
1YI2:0439:0440
2QA4:0439:0440
1NJI:A1708:A1709
3ADL:B8:B9
1YJ9:01708:01709
1VQ9:0439:0440
3F1E:A852:A853
1YJN:01708:01709
3KNH:A1044:A1045
3R8N:A878:A879
2VPL:B17:B18
2OTJ:030:031
1VQL:0586:0587
3F1H:B67:B68
1VQ9:01708:01709
2VQF:A369:A370
3F1E:A369:A370
1Q86:A1708:A1709
2QEX:01708:01709
1K8A:A1751:A1752
1YI2:0493:0494
3CD6:966:967
3CXC:0493:0494
3CME:0439:0440
1JJ2:0493:0494
1M90:A493:A494
1Q82:A1751:A1752
3CD6:02094:02095
3KNI:A2499:A2500
3CCU:0493:0494
3CME:966:967
1YJW:0586:0587
3CMA:0586:0587
3CCU:0586:0587
3CME:0586:0587
Closest classifer groups: show all      show selected
Group Members RMSD
stacking/>< 6 0.095
base-ribose/H_0BR 3 0.119
base-phosphate/H_0BPh 27 0.129
stacking/>> 28 0.136
stacking/<< 18 0.177
base-ribose/H_7BR 62 0.242
base-phosphate/H_9BPh 55 0.405
base-phosphate/H_8BPh 2 0.497
base-ribose/W_6BR 14 0.560
base-phosphate/W_4BPh 24 0.560

Extra

PDB:download
Reference image (generated by PyMOL):
pymol image
show in jmol
All members (generated by PyMOL):
pymol image
show in jmol