sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3R8T-A1866-A1867
X
>3OHY-A447-A448
X
>3OI0-A447-A448
X
>2OTJ-01520-01521
X
>3CPW-01520-01521
X
>1VQN-01520-01521
X
>3CD6-02636-02637
X
>1QVG-01520-01521
X
>1VQO-01520-01521
X
>3CCU-01520-01521
X
</seq>
<hsp>
0 1:0.549429136724
0 2:0.541025522414
0 3:0.776858924247
0 4:0.718771492718
0 5:0.619692126149
0 6:0.555686576603
0 7:0.566273017847
0 8:0.710348150965
0 9:0.760497383631
1 2:0.0154604191583
1 3:0.999998060324
1 4:0.894230425026
1 5:0.778378055383
1 6:0.753460115135
1 7:0.821792700496
1 8:0.877683155553
1 9:0.882077509146
2 3:0.991756956869
2 4:0.886166349527
2 5:0.770143343679
2 6:0.745071614528
2 7:0.81252074887
2 8:0.869488831683
2 9:0.873534029562
3 4:0.205674980845
3 5:0.336064319817
3 6:0.421965072692
3 7:0.267336813895
3 8:0.22584214682
3 9:0.275346181845
4 5:0.188409007848
4 6:0.348589032255
4 7:0.213276556935
4 8:0.145616288234
4 9:0.179560737868
5 6:0.190733771029
5 7:0.238612751119
5 8:0.144476683655
5 9:0.206850123279
6 7:0.31569455679
6 8:0.249668109843
6 9:0.327046205461
7 8:0.239331063159
7 9:0.275380952042
8 9:0.13505149173
</hsp>