sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3KNK-A1281-A1282
X
>2J01-A1821-A1846
X
>3CC4-0566-0567
X
>1Q82-A566-A567
X
>2OTJ-0566-0567
X
>3R8T-A1369-A1370
X
>2QA4-0291-0292
X
>3F1F-A1436-A1437
X
>2ZJR-X751-X752
X
>3KNH-A658-A659
X
</seq>
<hsp>
0 1:0.648821143499
0 2:0.531032373058
0 3:0.668517567522
0 4:0.602612529251
0 5:0.753836560372
0 6:0.714691621316
0 7:0.901712266609
0 8:0.999998996183
0 9:0.897791093869
1 2:0.543893855553
1 3:0.621892244094
1 4:0.574161122245
1 5:0.788259313479
1 6:0.56341667123
1 7:0.571778174932
1 8:0.871885619152
1 9:0.742511775943
2 3:0.155106956097
2 4:0.233126880952
2 5:0.635784086296
2 6:0.284228046232
2 7:0.720114256676
2 8:0.918838301714
2 9:0.808240098277
3 4:0.283238747638
3 5:0.643613127981
3 6:0.266115352559
3 7:0.738408928778
3 8:0.936807881205
3 9:0.827015653513
4 5:0.59843220989
4 6:0.296284710919
4 7:0.62746776926
4 8:0.772999337214
4 9:0.706138362617
5 6:0.749999845799
5 7:0.798629917648
5 8:0.746019240379
5 9:0.52299544531
6 7:0.550228555735
6 8:0.829807246926
6 9:0.761202080789
7 8:0.465479277823
7 9:0.45058732799
8 9:0.355400658482
</hsp>