sequences=12
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3CME-01680-01642
X
>2CKY-B18-B20
X
>1YIT-01680-01642
X
>3D2G-B18-B20
X
>3D2G-A18-A20
X
>2QBZ-X144-X86
X
>3CCJ-01680-01642
X
>3OI1-A1759-A1886
X
>3U5H-51185-51213
X
>3OH7-A1759-A1886
X
>3U5D-11125-11262
X
>3D2V-B18-B20
X
</seq>
<hsp>
0 1:0.981599157774
0 2:0.40184048827
0 3:0.975808881004
0 4:0.882913790891
0 5:0.690574661453
0 6:0.628138263697
0 7:0.674106380475
0 8:0.734291206639
0 9:0.735257294202
0 10:1.0
0 11:0.921576945667
1 2:0.692387391995
1 3:0.532212748831
1 4:0.38615900248
1 5:0.438648696661
1 6:0.789707550061
1 7:0.456044379806
1 8:0.570463699333
1 9:0.513145199365
1 10:0.357153808756
1 11:0.583540981127
2 3:0.740529855168
2 4:0.617087892637
2 5:0.375721002144
2 6:0.454390977412
2 7:0.406543740756
2 8:0.457326611913
2 9:0.435750561165
2 10:0.65028644971
2 11:0.591533317317
3 4:0.268793867728
3 5:0.612547528584
3 6:0.809270353507
3 7:0.489741112779
3 8:0.403092411426
3 9:0.532723333993
3 10:0.479082254293
3 11:0.444023192732
4 5:0.488714655301
4 6:0.789129152132
4 7:0.383273069747
4 8:0.41324430255
4 9:0.456367221433
4 10:0.371143061389
4 11:0.458659649538
5 6:0.557275126003
5 7:0.19741975289
5 8:0.381936348138
5 9:0.20274438071
5 10:0.386003490232
5 11:0.531402110781
6 7:0.632563048077
6 8:0.528646496943
6 9:0.628976926608
6 10:0.776924335176
6 11:0.564308129381
7 8:0.301731134462
7 9:0.142760153824
7 10:0.382919392526
7 11:0.521331341338
8 9:0.278253206605
8 10:0.417470670971
8 11:0.306503636598
9 10:0.348905458106
9 11:0.488961467475
10 11:0.420659846926
</hsp>