sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3B4C-B25-B27
X
>1HR2-B155-B3
X
>3KNK-A2662-A2664
X
>3D2X-B11-B32
X
>3D2G-A11-A32
X
>3D2X-A11-A32
X
>3D2V-A11-A32
X
>3F1F-A2741-A2743
X
>3F1H-A2741-A2743
X
</seq>
<hsp>
0 1:0.578903711784
0 2:0.559417455953
0 3:0.486652680265
0 4:0.446155309261
0 5:0.31185738916
0 6:0.389471240558
0 7:0.531805408028
0 8:0.530145907767
1 2:1.0
1 3:0.295677672336
1 4:0.446937987776
1 5:0.488339047321
1 6:0.401490118715
1 7:0.724052531553
1 8:0.713258796208
2 3:0.803634099917
2 4:0.728791266761
2 5:0.558770040608
2 6:0.668014853504
2 7:0.402418235185
2 8:0.414021838386
3 4:0.279175052024
3 5:0.293626324091
3 6:0.242680074837
3 7:0.548740941898
3 8:0.540496699507
4 5:0.238904545862
4 6:0.14470437379
4 7:0.511080034703
4 8:0.504773226016
5 6:0.173124532986
5 7:0.362436558944
5 8:0.355952361897
6 7:0.41496992993
6 8:0.407427470907
7 8:0.0196253234813
</hsp>