sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2J02-A419-A421
X
>1QVG-01068-01206
X
>3OHK-A1013-A1092
X
>2UXC-A419-A421
X
>3OH7-A1013-A1092
X
>2QA4-01067-01205
X
>3KNI-A1019-A1098
X
>3F1F-A1031-A1162
X
</seq>
<hsp>
0 1:0.559261370392
0 2:0.601640368473
0 3:0.961665105226
0 4:0.682856332946
0 5:0.607431029455
0 6:0.579964248367
0 7:0.84596464278
1 2:0.178103697047
1 3:0.891409764694
1 4:0.332864577497
1 5:0.151835246355
1 6:0.414792350959
1 7:0.616681588935
2 3:0.78966967594
2 4:0.272497051131
2 5:0.24902585656
2 6:0.467825917275
2 7:0.53308900725
3 4:0.632198827464
3 5:0.867694952273
3 6:1.0
3 7:0.456975684374
4 5:0.322067148469
4 6:0.526730982501
4 7:0.416064316657
5 6:0.411518964444
5 7:0.548109884298
6 7:0.692337150519
</hsp>