sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3OH5-A2484-A2483
X
>3KNI-A2559-A2558
X
>3OI1-A2484-A2483
X
>3OHZ-A2484-A2483
X
>3OHK-A2484-A2483
X
>3R8S-A90-A89
X
>3OHJ-A2484-A2483
X
>3CCS-02323-02376
X
>3R8T-A2646-A2645
X
>3R8T-A90-A89
X
</seq>
<hsp>
0 1:0.572941125876
0 2:0.220789285493
0 3:0.22888736394
0 4:0.326412511539
0 5:0.53185470364
0 6:0.35050512032
0 7:1.0
0 8:0.960965755156
0 9:0.847736214888
1 2:0.50843668908
1 3:0.537286076537
1 4:0.38143473103
1 5:0.650432163052
1 6:0.421392276764
1 7:0.728084299691
1 8:0.748359522253
1 9:0.673060317388
2 3:0.0858054245872
2 4:0.295610013676
2 5:0.435660431255
2 6:0.328695730217
2 7:0.954386068386
2 8:0.858150553893
2 9:0.723006669827
3 4:0.280693992078
3 5:0.451800844683
3 6:0.299331421948
3 7:0.966319053828
3 8:0.892152682764
3 9:0.731529560313
4 5:0.477786978853
4 6:0.0645986379285
4 7:0.760827984638
4 8:0.793434888246
4 9:0.60503772015
5 6:0.491709425764
5 7:0.72785151567
5 8:0.594686939002
5 9:0.55504098568
6 7:0.762673958465
6 8:0.820365768794
6 9:0.612681798142
7 8:0.577348959199
7 9:0.577555466456
8 9:0.442282334229
</hsp>