sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3R8T-A1706-A1705
X
>2ZJR-X217-X216
X
>3F1H-A2250-A2249
X
>3F1F-A2250-A2249
X
>3R8S-A1706-A1705
X
>1YJW-02530-02529
X
>3OHJ-A2096-A2095
X
>3OI1-A2096-A2095
X
>3OHZ-A2096-A2095
X
</seq>
<hsp>
0 1:0.999990004993
0 2:0.84898278521
0 3:0.855072990461
0 4:0.529368430023
0 5:0.609129733438
0 6:0.61974003
0 7:0.614603230144
0 8:0.638995270865
1 2:0.209214805635
1 3:0.217256415573
1 4:0.55291979047
1 5:0.426943579557
1 6:0.496844062749
1 7:0.543942530529
1 8:0.518948073059
2 3:0.0260828129155
2 4:0.37791448953
2 5:0.261413947951
2 6:0.356211012705
2 7:0.375888308467
2 8:0.350529295945
3 4:0.377311396565
3 5:0.2688927078
3 6:0.362652614953
3 7:0.386951815884
3 8:0.359618703213
4 5:0.23132351183
4 6:0.350823958057
4 7:0.349490027822
4 8:0.348646625876
5 6:0.178405707921
5 7:0.211520949407
5 8:0.193081964501
6 7:0.225426831645
6 8:0.177664823805
7 8:0.0817614534098
</hsp>