sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3CCQ-02505-02504
X
>1YI2-02505-02504
X
>1YIJ-02505-02504
X
>2QA4-02504-02503
X
>1YJW-02505-02504
X
>1YJN-02505-02504
X
>3CC7-02505-02504
X
>3CCR-02505-02504
X
>3KNK-A2171-A2170
X
</seq>
<hsp>
0 1:0.327790223807
0 2:0.337347793845
0 3:0.530024363421
0 4:0.193377105876
0 5:0.395536871987
0 6:0.481307488503
0 7:0.51684698224
0 8:0.791016487269
1 2:0.118976453554
1 3:0.365954671874
1 4:0.234749918316
1 5:0.119282336533
1 6:0.479495480134
1 7:0.57923167843
1 8:0.795013125
2 3:0.389893733452
2 4:0.203609831327
2 5:0.116043635472
2 6:0.564331281251
2 7:0.626992414371
2 8:0.813485329934
3 4:0.436699203651
3 5:0.398731339338
3 6:0.718129750041
3 7:0.839544651389
3 8:1.0
4 5:0.261983851171
4 6:0.523266514141
4 7:0.547624559194
4 8:0.739271265234
5 6:0.514442515034
5 7:0.588610859412
5 8:0.766064920313
6 7:0.234876077545
6 8:0.583879039334
7 8:0.417991735366
</hsp>