sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3D2X-B31-B11
X
>3D2G-B31-B11
X
>2CKY-B31-B11
X
>3D2X-A31-A11
X
>3D2V-B31-B11
X
>3D2V-A31-A11
X
>2CKY-A31-A11
X
>3D2G-A31-A11
X
</seq>
<hsp>
0 1:0.999998715576
0 2:0.7151477448
0 3:0.510589197159
0 4:0.350776567438
0 5:0.519991013338
0 6:0.663470984333
0 7:0.813225705264
1 2:0.580204720563
1 3:0.804499438497
1 4:0.721631493155
1 5:0.655022955986
1 6:0.53838838012
1 7:0.311629884288
2 3:0.710934551501
2 4:0.461514898779
2 5:0.387506461339
2 6:0.40469175391
2 7:0.575573967237
3 4:0.375750818726
3 5:0.364591431404
3 6:0.594036045259
3 7:0.536399774216
4 5:0.252640120453
4 6:0.500723595056
4 7:0.54814472905
5 6:0.416245105586
5 7:0.48170848122
6 7:0.450638193919
</hsp>