sequences=12
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3F1H-A225-A224
X
>3R8S-A1808-A1807
X
>3F1E-A861-A860
X
>3OHZ-A222-A221
X
>3R8T-A1119-A1118
X
>3F1F-A1145-A1144
X
>3KNK-A978-A977
X
>3R8S-A799-A798
X
>2J01-A1376-A1375
X
>3KNI-A1081-A1080
X
>2J03-A1376-A1375
X
>2QA4-0104-0102
X
</seq>
<hsp>
0 1:0.240203759804
0 2:0.456476617799
0 3:0.232568422265
0 4:0.524296433699
0 5:0.540021966464
0 6:0.437592483018
0 7:0.340414624296
0 8:0.303570751148
0 9:0.677727610218
0 10:0.309390269429
0 11:0.323912945983
1 2:0.599241782128
1 3:0.154790604811
1 4:0.416820829314
1 5:0.453882743103
1 6:0.534149347132
1 7:0.521956434473
1 8:0.377506299072
1 9:0.582336341785
1 10:0.38566660899
1 11:0.33967866018
2 3:0.634636429479
2 4:0.900245910557
2 5:0.826178039226
2 6:0.577210691461
2 7:0.410492113519
2 8:0.346500158178
2 9:0.968410345445
2 10:0.333038634832
2 11:0.412884070991
3 4:0.445063160755
3 5:0.468193402364
3 6:0.499758908143
3 7:0.508110767546
3 8:0.428398803633
3 9:0.571807284533
3 10:0.440374353797
3 11:0.386755471876
4 5:0.296254790162
4 6:0.863458863926
4 7:0.806531808973
4 8:0.730941668417
4 9:0.375648164972
4 10:0.734517879919
4 11:0.59362803062
5 6:0.921783187476
5 7:0.846450651238
5 8:0.738630806441
5 9:0.230475798743
5 10:0.741243838112
5 11:0.536887332036
6 7:0.285559556918
6 8:0.398066024264
6 9:1.0
6 10:0.402521150412
6 11:0.543339835641
7 8:0.311955264587
7 9:0.956001782919
7 10:0.310413475128
7 11:0.463006603993
8 9:0.879275716527
8 10:0.0289837679523
8 11:0.307058213839
9 10:0.880558594927
9 11:0.642094690532
10 11:0.298021008449
</hsp>