sequences=11
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3KNI-A405-A403
X
>2J01-A2186-A2185
X
>3KNI-A758-A756
X
>2J03-A758-A756
X
>3R8T-A749-A747
X
>3F1H-A770-A768
X
>3R8S-A749-A747
X
>3OH5-A758-A756
X
>2ZJR-X684-X682
X
>3OI1-A758-A756
X
>3OHJ-A758-A756
X
</seq>
<hsp>
0 1:1.0
0 2:0.394949568558
0 3:0.50890096158
0 4:0.497643572886
0 5:0.436585083425
0 6:0.66413540641
0 7:0.578300952676
0 8:0.702825963537
0 9:0.670885937762
0 10:0.617856424868
1 2:0.751988033019
1 3:0.64886448179
1 4:0.886225272302
1 5:0.678352964973
1 6:0.716969079198
1 7:0.651051873777
1 8:0.759689823609
1 9:0.738853727616
1 10:0.73023216497
2 3:0.359846320166
2 4:0.534088275356
2 5:0.399492513065
2 6:0.678160988591
2 7:0.556766257517
2 8:0.743276709633
2 9:0.669309103383
2 10:0.63764292179
3 4:0.584693142775
3 5:0.313725444841
3 6:0.455384784592
3 7:0.363887772219
3 8:0.582819911976
3 9:0.449283390161
3 10:0.485121138991
4 5:0.50419316128
4 6:0.484175457158
4 7:0.455663449874
4 8:0.704423707537
4 9:0.562024477917
4 10:0.426355927652
5 6:0.422053569844
5 7:0.27069519516
5 8:0.359004597094
5 9:0.343708856721
5 10:0.343344331249
6 7:0.189623266402
6 8:0.438501451916
6 9:0.226048977683
6 10:0.192881833769
7 8:0.360704369627
7 9:0.174003745318
7 10:0.14062062793
8 9:0.312172577426
8 10:0.35860657101
9 10:0.179555869529
</hsp>