sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3U5H-5751-5749
X
>3KNK-A677-A675
X
>3OHZ-A678-A676
X
>3U5D-1745-1743
X
>3KNI-A678-A676
X
>3OH7-A678-A676
X
>3OH5-A678-A676
X
>3OHJ-A678-A676
X
>3OHK-A678-A676
X
>3F1H-A690-A688
X
</seq>
<hsp>
0 1:0.493923119131
0 2:0.621364568378
0 3:0.338794039781
0 4:0.716022754757
0 5:0.524204451149
0 6:0.521361221944
0 7:0.427716389886
0 8:0.43833351982
0 9:0.783532786909
1 2:0.747891829422
1 3:0.765388668164
1 4:0.940819987382
1 5:0.790583224383
1 6:0.792807348378
1 7:0.765700548541
1 8:0.766724755442
1 9:1.0
2 3:0.669161905559
2 4:0.556903116434
2 5:0.488410545475
2 6:0.475935942806
2 7:0.608093188739
2 8:0.60135988285
2 9:0.751812922808
3 4:0.668620468172
3 5:0.390672960345
3 6:0.392783184106
3 7:0.312775880685
3 8:0.320285265202
3 9:0.723064466482
4 5:0.421739094361
4 6:0.391592415018
4 7:0.442923824749
4 8:0.450043673927
4 9:0.366684079633
5 6:0.0734394588337
5 7:0.251356227157
5 8:0.234684263412
5 9:0.527835456054
6 7:0.235962346481
6 8:0.231061039829
6 9:0.53986054576
7 8:0.0535792917496
7 9:0.558782711726
8 9:0.55272313505
</hsp>