sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3GES-A9-A57
X
>1Y27-X10-X58
X
>3RKF-A9-A57
X
>3GOT-A9-A57
X
>3DS7-A9-A57
X
>3GER-A9-A57
X
>3LA5-A11-A59
X
>3G4M-A9-A57
X
>3GOG-A8-A56
X
>3DS7-B9-B57
X
</seq>
<hsp>
0 1:0.325334970422
0 2:0.710763145077
0 3:0.401190091503
0 4:0.219845449426
0 5:0.296879700607
0 6:0.705647185045
0 7:0.988500205145
0 8:0.540323507838
0 9:0.703265476991
1 2:0.59431535435
1 3:0.387992637276
1 4:0.356920236517
1 5:0.351755859389
1 6:0.587738591995
1 7:0.972735404538
1 8:0.597116306827
1 9:0.676730551479
2 3:0.828620952878
2 4:0.694178176044
2 5:0.720997816485
2 6:0.655353952157
2 7:0.841456885099
2 8:0.818600624541
2 9:0.664042886194
3 4:0.436252861347
3 5:0.24902968786
3 6:0.531292668787
3 7:0.903092797013
3 8:0.413642659668
3 9:0.645163849281
4 5:0.306762438121
4 6:0.700231842175
4 7:1.0
4 8:0.477978661558
4 9:0.589292083075
5 6:0.554003355435
5 7:0.791768092793
5 8:0.293726997185
5 9:0.514454630013
6 7:0.688115269061
6 8:0.53600142492
6 9:0.525918893778
7 8:0.689557443234
7 9:0.655665513999
8 9:0.364892556085
</hsp>