sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3L0U-A20-A45
X
>3U5D-11658-11672
X
>1RLG-C6-C16
X
>1H4S-T18-T43
X
>1H4Q-T18-T43
X
>1I9V-A20-A45
X
>3KFU-N18-N43
X
>1RLG-D6-D16
X
>3NVI-F5-F15
X
>3NVI-E5-E15
X
</seq>
<hsp>
0 1:0.51872642288
0 2:0.37008992367
0 3:0.565667112782
0 4:0.592291199243
0 5:0.721793879973
0 6:0.674332049406
0 7:1.0
0 8:0.705071434449
0 9:0.750244515987
1 2:0.430348683917
1 3:0.279525944377
1 4:0.269915262583
1 5:0.706589685654
1 6:0.539586589053
1 7:0.72288902614
1 8:0.606378842576
1 9:0.540050538349
2 3:0.358574652061
2 4:0.425308255302
2 5:0.539774996588
2 6:0.472541902179
2 7:0.686234042162
2 8:0.355209341075
2 9:0.447225957545
3 4:0.125204372347
3 5:0.707831260088
3 6:0.479804262569
3 7:0.51413359609
3 8:0.434802370432
3 9:0.387585385694
4 5:0.735967966662
4 6:0.465581228651
4 7:0.564977712418
4 8:0.507980885858
4 9:0.422057253577
5 6:0.39655671027
5 7:0.907669208209
5 8:0.61093542249
5 9:0.57103747646
6 7:0.685151184154
6 8:0.50256007932
6 9:0.326113956263
7 8:0.429113949898
7 9:0.382806259456
8 9:0.288984601346
</hsp>