sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2CKY-B48-B47
X
>2HOM-A49-A48
X
>3D2V-B48-B47
X
>2CKY-A48-A47
X
>3D2V-A48-A47
X
>2GDI-Y51-Y50
X
>2HOJ-A48-A47
X
>2HOL-A48-A47
X
</seq>
<hsp>
0 1:1.0
0 2:0.585670982597
0 3:0.877299927249
0 4:0.664118042503
0 5:0.682194291567
0 6:0.778776424603
0 7:0.843974332393
1 2:0.56039507733
1 3:0.714933946252
1 4:0.561779325858
1 5:0.464226086521
1 6:0.433606919732
1 7:0.480516356284
2 3:0.422040467216
2 4:0.124105945242
2 5:0.167757287454
2 6:0.280154979137
2 7:0.330057009496
3 4:0.385432928769
3 5:0.365207038539
3 6:0.393465027957
3 7:0.299407851974
4 5:0.21194029258
4 6:0.225868515844
4 7:0.274768728254
5 6:0.226261287667
5 7:0.234509558481
6 7:0.140518443728
</hsp>