sequences=7
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3U5B-2161-2162
X
>3U5D-12997-12993
X
>3U5D-197-198
X
>3U5H-597-598
X
>3KNI-A1304-A1303
X
>3OHJ-A1298-A1297
X
>2J01-A1298-A1297
X
</seq>
<hsp>
0 1:0.523017343756
0 2:0.551902146334
0 3:0.638099837214
0 4:0.896301653469
0 5:0.798409744963
0 6:0.964905320877
1 2:0.784050250999
1 3:0.803381853269
1 4:0.842008304644
1 5:0.775313476943
1 6:0.999998630042
2 3:0.14101401722
2 4:0.721505716505
2 5:0.435404436113
2 6:0.561978464972
3 4:0.687114643575
3 5:0.360451247821
3 6:0.500277202488
4 5:0.481120456008
4 6:0.471639668386
5 6:0.278393288186
</hsp>