sequences=12
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1VTQ-A20-A45
X
>2TRA-A20-A45
X
>3TRA-A20-A45
X
>3Q3Z-A11-A50
X
>3R8T-A2043-A2606
X
>1E7K-D4-D13
X
>3F1F-A2045-A2598
X
>3F1H-A2045-A2598
X
>3Q3Z-V11-V50
X
>3R8S-A2044-A2607
X
>3OHZ-A1967-A2444
X
>3OH5-A1967-A2444
X
</seq>
<hsp>
0 1:0.267177524813
0 2:0.0732751423437
0 3:0.771967561504
0 4:0.935263550177
0 5:0.812438664846
0 6:0.854448963695
0 7:0.807426702914
0 8:0.712032852734
0 9:0.845028256908
0 10:0.893780415744
0 11:0.856926469181
1 2:0.275169423799
1 3:0.952210908274
1 4:0.974021453484
1 5:1.0
1 6:0.901895326497
1 7:0.863018201615
1 8:0.876782690451
1 9:0.839386581292
1 10:0.964602943063
1 11:0.911046052767
2 3:0.726687010083
2 4:0.891988451766
2 5:0.766660809713
2 6:0.80441583531
2 7:0.756931422266
2 8:0.669308246141
2 9:0.807531367192
2 10:0.848978267552
2 11:0.810049286707
3 4:0.731292762874
3 5:0.115315389075
3 6:0.561940762597
3 7:0.519583658586
3 8:0.202910237046
3 9:0.749353882926
3 10:0.538021469354
3 11:0.547661381278
4 5:0.776406552463
4 6:0.367518638146
4 7:0.384532300595
4 8:0.605538556409
4 9:0.326538929109
4 10:0.414010569042
4 11:0.400586654613
5 6:0.612213199824
5 7:0.57110741734
5 8:0.244080529994
5 9:0.805860889095
5 10:0.568707796451
5 11:0.585146651929
6 7:0.0565535411199
6 8:0.483199517306
6 9:0.32077403939
6 10:0.251272165785
6 11:0.246653629334
7 8:0.440817857201
7 9:0.331990932488
7 10:0.244582549566
7 11:0.237108688806
8 9:0.608219342056
8 10:0.412211213663
8 11:0.414395129411
9 10:0.34397634554
9 11:0.297723000033
10 11:0.119307002072
</hsp>