sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3KNH-A931-A930
X
>3CCJ-01189-01188
X
>2VQF-A1261-A1260
X
>1QVG-01582-01581
X
>1YJN-01582-01581
X
>2QA4-01188-01187
X
>1FJG-A1261-A1260
X
>3KNH-A1252-A1251
X
</seq>
<hsp>
0 1:0.518249310882
0 2:0.999995202525
0 3:0.731007455557
0 4:0.738194740607
0 5:0.797861114079
0 6:0.917834329579
0 7:0.975187952445
1 2:0.700106589075
1 3:0.461212571734
1 4:0.462065202108
1 5:0.410321048949
1 6:0.603837308559
1 7:0.615431632773
2 3:0.402301921728
2 4:0.389260393829
2 5:0.447520737736
2 6:0.257693772874
2 7:0.292181351694
3 4:0.0851206148328
3 5:0.259910893294
3 6:0.273190569236
3 7:0.408780332221
4 5:0.211476109422
4 6:0.27427874944
4 7:0.413633041438
5 6:0.321344369231
5 7:0.406302160524
6 7:0.264081454131
</hsp>