ClaRNA

Doublet Group distance statistics: 53967

back

Distances from reference structure (by RMSD)

1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0,

RMS Distances matrix

Distances graph

Distances from reference structure (by atoms)

Atom Chain Distances
C5 A 0, 0.000, 0.004, 0.008, 0.008 max_d=0.008 avg_d=0.004 std_dev=0.004
N3 A 0, 0.000, 0.025, 0.050, 0.050 max_d=0.050 avg_d=0.025 std_dev=0.025
C6 A 0, 0.000, 0.032, 0.064, 0.064 max_d=0.064 avg_d=0.032 std_dev=0.032
C2 A 0, 0.000, 0.033, 0.067, 0.067 max_d=0.067 avg_d=0.033 std_dev=0.033
C4 A 0, 0.000, 0.036, 0.071, 0.071 max_d=0.071 avg_d=0.036 std_dev=0.036
N1 A 0, 0.000, 0.039, 0.077, 0.077 max_d=0.077 avg_d=0.039 std_dev=0.039
C1' A 0, 0.000, 0.046, 0.091, 0.091 max_d=0.091 avg_d=0.046 std_dev=0.046
O2 A 0, 0.000, 0.079, 0.158, 0.158 max_d=0.158 avg_d=0.079 std_dev=0.079
N4 A 0, 0.000, 0.097, 0.194, 0.194 max_d=0.194 avg_d=0.097 std_dev=0.097
OP1 B 0, 0.000, 0.537, 1.074, 1.074 max_d=1.074 avg_d=0.537 std_dev=0.537
O4' A 0, 0.000, 0.584, 1.168, 1.168 max_d=1.168 avg_d=0.584 std_dev=0.584
C4' A 0, 0.000, 0.618, 1.236, 1.236 max_d=1.236 avg_d=0.618 std_dev=0.618
P B 0, 0.000, 0.655, 1.310, 1.310 max_d=1.310 avg_d=0.655 std_dev=0.655
OP2 B 0, 0.000, 0.708, 1.416, 1.416 max_d=1.416 avg_d=0.708 std_dev=0.708
C2' A 0, 0.000, 0.757, 1.513, 1.513 max_d=1.513 avg_d=0.757 std_dev=0.757
C3' A 0, 0.000, 1.090, 2.179, 2.179 max_d=2.179 avg_d=1.090 std_dev=1.090
O2' A 0, 0.000, 1.167, 2.334, 2.334 max_d=2.334 avg_d=1.167 std_dev=1.167
C5' A 0, 0.000, 1.221, 2.442, 2.442 max_d=2.442 avg_d=1.221 std_dev=1.221
O5' A 0, 0.000, 1.343, 2.685, 2.685 max_d=2.685 avg_d=1.343 std_dev=1.343
OP1 A 0, 0.000, 1.647, 3.294, 3.294 max_d=3.294 avg_d=1.647 std_dev=1.647
O3' A 0, 0.000, 1.735, 3.469, 3.469 max_d=3.469 avg_d=1.735 std_dev=1.735
O5' B 0, 0.000, 1.758, 3.515, 3.515 max_d=3.515 avg_d=1.758 std_dev=1.758
P A 0, 0.000, 2.219, 4.437, 4.437 max_d=4.437 avg_d=2.219 std_dev=2.219
C5' B 0, 0.000, 2.518, 5.036, 5.036 max_d=5.036 avg_d=2.518 std_dev=2.518
OP2 A 0, 0.000, 3.602, 7.205, 7.205 max_d=7.205 avg_d=3.602 std_dev=3.602
C4' B 0, 0.000, 3.906, 7.812, 7.812 max_d=7.812 avg_d=3.906 std_dev=3.906
C5 B 0, 0.000, 4.172, 8.344, 8.344 max_d=8.344 avg_d=4.172 std_dev=4.172
C6 B 0, 0.000, 4.287, 8.574, 8.574 max_d=8.574 avg_d=4.287 std_dev=4.287
O4' B 0, 0.000, 4.459, 8.917, 8.917 max_d=8.917 avg_d=4.459 std_dev=4.459
C3' B 0, 0.000, 4.555, 9.110, 9.110 max_d=9.110 avg_d=4.555 std_dev=4.555
O3' B 0, 0.000, 4.810, 9.619, 9.619 max_d=9.619 avg_d=4.810 std_dev=4.810
C4 B 0, 0.000, 5.322, 10.643, 10.643 max_d=10.643 avg_d=5.322 std_dev=5.322
O4 B 0, 0.000, 5.394, 10.788, 10.788 max_d=10.788 avg_d=5.394 std_dev=5.394
N1 B 0, 0.000, 5.436, 10.873, 10.873 max_d=10.873 avg_d=5.436 std_dev=5.436
C1' B 0, 0.000, 5.540, 11.080, 11.080 max_d=11.080 avg_d=5.540 std_dev=5.540
C2' B 0, 0.000, 5.832, 11.664, 11.664 max_d=11.664 avg_d=5.832 std_dev=5.832
N3 B 0, 0.000, 6.461, 12.922, 12.922 max_d=12.922 avg_d=6.461 std_dev=6.461
C2 B 0, 0.000, 6.579, 13.158, 13.158 max_d=13.158 avg_d=6.579 std_dev=6.579
O2' B 0, 0.000, 6.701, 13.402, 13.402 max_d=13.402 avg_d=6.701 std_dev=6.701
O2 B 0, 0.000, 7.644, 15.289, 15.289 max_d=15.289 avg_d=7.644 std_dev=7.644

Atoms distances (summary)

atom dist matrix

Atoms distances Chain-A - Chain-A

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3N4O2O2'O3'O4'O5'OP1OP2P
C1' 0.00 0.04 0.00 0.02 0.04 0.02 0.02 0.00 0.01 0.02 0.04 0.03 0.06 0.02 0.03 0.01 0.09 0.11 0.08 0.03
C2 0.04 0.00 0.14 0.04 0.01 0.05 0.01 0.19 0.00 0.01 0.01 0.01 0.00 0.32 0.04 0.10 0.43 0.13 0.62 0.49
C2' 0.00 0.14 0.00 0.01 0.05 0.01 0.19 0.01 0.23 0.03 0.08 0.07 0.31 0.00 0.01 0.00 0.17 0.08 0.23 0.04
C3' 0.02 0.04 0.01 0.00 0.24 0.00 0.33 0.01 0.31 0.14 0.12 0.26 0.11 0.01 0.01 0.00 0.27 0.33 0.21 0.13
C4 0.04 0.01 0.05 0.24 0.00 0.08 0.00 0.19 0.00 0.02 0.00 0.00 0.01 0.10 0.28 0.04 0.58 0.40 1.16 0.77
C4' 0.02 0.05 0.01 0.00 0.08 0.00 0.08 0.00 0.05 0.05 0.08 0.10 0.02 0.06 0.04 0.01 0.02 0.02 0.45 0.12
C5 0.02 0.01 0.19 0.33 0.00 0.08 0.00 0.12 0.00 0.01 0.00 0.01 0.01 0.10 0.44 0.14 0.52 0.44 1.08 0.70
C5' 0.00 0.19 0.01 0.01 0.19 0.00 0.12 0.00 0.06 0.11 0.22 0.22 0.19 0.06 0.00 0.01 0.00 0.28 0.34 0.00
C6 0.01 0.00 0.23 0.31 0.00 0.05 0.00 0.06 0.00 0.01 0.01 0.01 0.01 0.15 0.40 0.17 0.41 0.31 0.73 0.50
N1 0.02 0.01 0.03 0.14 0.02 0.05 0.01 0.11 0.01 0.00 0.01 0.02 0.01 0.07 0.12 0.02 0.36 0.14 0.47 0.38
N3 0.04 0.01 0.08 0.12 0.00 0.08 0.00 0.22 0.01 0.01 0.00 0.01 0.00 0.27 0.08 0.05 0.54 0.27 0.95 0.68
N4 0.03 0.01 0.07 0.26 0.00 0.10 0.01 0.22 0.01 0.02 0.01 0.00 0.01 0.09 0.33 0.05 0.63 0.48 1.37 0.88
O2 0.06 0.00 0.31 0.11 0.01 0.02 0.01 0.19 0.01 0.01 0.00 0.01 0.00 0.55 0.28 0.19 0.35 0.01 0.38 0.36
O2' 0.02 0.32 0.00 0.01 0.10 0.06 0.10 0.06 0.15 0.07 0.27 0.09 0.55 0.00 0.07 0.06 0.03 0.14 0.60 0.19
O3' 0.03 0.04 0.01 0.01 0.28 0.04 0.44 0.00 0.40 0.12 0.08 0.33 0.28 0.07 0.00 0.03 0.18 0.33 0.55 0.03
O4' 0.01 0.10 0.00 0.00 0.04 0.01 0.14 0.01 0.17 0.02 0.05 0.05 0.19 0.06 0.03 0.00 0.00 0.11 0.12 0.00
O5' 0.09 0.43 0.17 0.27 0.58 0.02 0.52 0.00 0.41 0.36 0.54 0.63 0.35 0.03 0.18 0.00 0.00 0.01 0.01 0.00
OP1 0.11 0.13 0.08 0.33 0.40 0.02 0.44 0.28 0.31 0.14 0.27 0.48 0.01 0.14 0.33 0.11 0.01 0.00 0.00 0.00
OP2 0.08 0.62 0.23 0.21 1.16 0.45 1.08 0.34 0.73 0.47 0.95 1.37 0.38 0.60 0.55 0.12 0.01 0.00 0.00 0.00
P 0.03 0.49 0.04 0.13 0.77 0.12 0.70 0.00 0.50 0.38 0.68 0.88 0.36 0.19 0.03 0.00 0.00 0.00 0.00 0.00

Atoms distances Chain-A - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3O2O2'O3'O4O4'O5'OP1OP2P
C1' 0.81 0.33 0.35 0.10 0.10 0.84 0.04 0.69 0.24 0.44 0.07 0.45 0.71 0.06 0.27 1.07 0.60 0.20 0.14 0.29
C2 1.57 1.06 1.02 0.64 0.48 1.37 0.54 1.05 0.90 1.17 0.74 1.22 1.44 0.42 0.25 1.76 0.65 0.31 0.32 0.15
C2' 1.20 0.80 0.83 0.63 0.40 1.29 0.42 1.13 0.67 0.88 0.57 0.91 1.12 0.47 0.25 1.43 1.23 0.28 0.44 0.87
C3' 0.66 0.39 0.27 0.11 0.20 0.72 0.25 0.73 0.39 0.47 0.27 0.43 0.43 0.12 0.12 0.91 0.90 0.11 0.63 0.82
C4 2.15 1.70 1.59 1.15 1.05 1.76 1.08 1.34 1.48 1.79 1.36 1.86 1.96 0.92 0.76 2.24 0.66 0.35 0.43 0.02
C4' 0.21 0.51 0.68 0.84 0.63 0.13 0.53 0.04 0.41 0.39 0.61 0.49 0.48 1.07 0.69 0.10 0.11 0.30 0.10 0.24
C5 1.99 1.50 1.49 1.13 0.88 1.73 0.93 1.36 1.34 1.62 1.17 1.63 1.79 0.93 0.62 2.17 0.65 0.36 0.44 0.01
C5' 0.97 1.14 1.47 1.65 1.06 0.96 0.95 0.78 0.94 1.04 1.14 1.19 1.35 1.90 1.04 0.66 0.60 0.74 0.08 0.23
C6 1.53 1.02 1.08 0.80 0.46 1.47 0.50 1.18 0.87 1.13 0.72 1.16 1.40 0.63 0.25 1.77 0.67 0.35 0.37 0.08
N1 1.32 0.80 0.83 0.52 0.27 1.25 0.33 0.99 0.67 0.92 0.51 0.95 1.20 0.34 0.07 1.55 0.65 0.30 0.29 0.17
N3 1.94 1.47 1.37 0.93 0.83 1.61 0.87 1.22 1.25 1.56 1.13 1.64 1.79 0.70 0.56 2.06 0.67 0.33 0.38 0.09
N4 2.41 2.08 1.85 1.35 1.42 1.88 1.43 1.42 1.81 2.13 1.75 2.24 2.20 1.12 1.12 2.40 0.65 0.35 0.46 0.03
O2 1.40 0.90 0.82 0.44 0.35 1.20 0.41 0.91 0.75 1.00 0.59 1.06 1.27 0.21 0.13 1.59 0.62 0.30 0.28 0.18
O2' 1.12 0.69 0.77 0.61 0.28 1.25 0.32 1.13 0.58 0.78 0.45 0.82 1.09 0.48 0.12 1.35 1.37 0.68 0.61 1.13
O3' 0.71 0.52 0.36 0.28 0.42 0.81 0.47 0.93 0.56 0.59 0.44 0.52 0.42 0.04 0.37 0.95 1.33 0.85 1.30 1.53
O4' 0.06 0.49 0.55 0.76 0.76 0.01 0.67 0.01 0.47 0.36 0.67 0.41 0.23 0.91 0.87 0.24 0.07 0.59 0.44 0.14
O5' 1.08 1.26 1.72 1.86 1.03 1.00 0.85 0.64 0.88 1.10 1.21 1.37 1.62 2.19 0.99 0.65 0.59 0.56 0.11 0.12
OP1 1.77 2.01 2.54 2.33 1.47 1.36 1.12 0.65 1.23 1.70 1.86 2.31 2.66 2.76 1.37 1.12 0.50 0.03 0.61 0.25
OP2 0.97 0.87 1.79 1.90 0.24 1.11 0.01 0.65 0.23 0.70 0.63 1.19 2.04 2.66 0.09 0.55 0.54 0.66 0.47 0.06
P 1.53 1.60 2.32 2.36 1.08 1.44 0.83 0.89 0.97 1.39 1.42 1.85 2.42 2.95 0.97 1.03 0.73 0.55 0.31 0.11

Atoms distances Chain-B - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3O2O2'O3'O4O4'O5'OP1OP2P
C1' 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.02 0.00 0.03 0.00 0.00 0.31 0.31 0.14 0.28
C2 0.01 0.00 0.07 0.06 0.00 0.02 0.01 0.04 0.01 0.00 0.00 0.00 0.04 0.06 0.00 0.02 0.49 0.39 0.41 0.48
C2' 0.00 0.07 0.00 0.01 0.01 0.01 0.05 0.00 0.06 0.00 0.05 0.12 0.01 0.03 0.02 0.01 0.20 0.19 0.15 0.18
C3' 0.01 0.06 0.01 0.00 0.01 0.00 0.08 0.00 0.10 0.01 0.05 0.12 0.01 0.00 0.01 0.01 0.14 0.16 0.08 0.13
C4 0.00 0.00 0.01 0.01 0.00 0.01 0.00 0.02 0.00 0.01 0.00 0.00 0.01 0.01 0.00 0.00 0.73 0.62 0.71 0.76
C4' 0.00 0.02 0.01 0.00 0.01 0.00 0.02 0.00 0.03 0.00 0.02 0.03 0.03 0.02 0.01 0.00 0.01 0.17 0.18 0.01
C5 0.00 0.01 0.05 0.08 0.00 0.02 0.00 0.01 0.00 0.00 0.01 0.01 0.03 0.09 0.00 0.00 0.81 0.72 0.74 0.83
C5' 0.00 0.04 0.00 0.00 0.02 0.00 0.01 0.00 0.03 0.01 0.04 0.05 0.03 0.01 0.03 0.00 0.00 0.27 0.34 0.00
C6 0.00 0.01 0.06 0.10 0.00 0.03 0.00 0.03 0.00 0.00 0.01 0.01 0.04 0.11 0.01 0.01 0.75 0.64 0.57 0.72
N1 0.01 0.00 0.00 0.01 0.01 0.00 0.00 0.01 0.00 0.00 0.00 0.01 0.00 0.03 0.01 0.01 0.54 0.45 0.38 0.50
N3 0.01 0.00 0.05 0.05 0.00 0.02 0.01 0.04 0.01 0.00 0.00 0.00 0.04 0.05 0.00 0.01 0.60 0.48 0.57 0.61
O2 0.02 0.00 0.12 0.12 0.00 0.03 0.01 0.05 0.01 0.01 0.00 0.00 0.08 0.12 0.01 0.03 0.35 0.26 0.31 0.35
O2' 0.00 0.04 0.01 0.01 0.01 0.03 0.03 0.03 0.04 0.00 0.04 0.08 0.00 0.06 0.02 0.01 0.00 0.06 0.00 0.01
O3' 0.03 0.06 0.03 0.00 0.01 0.02 0.09 0.01 0.11 0.03 0.05 0.12 0.06 0.00 0.01 0.03 0.14 0.08 0.08 0.11
O4 0.00 0.00 0.02 0.01 0.00 0.01 0.00 0.03 0.01 0.01 0.00 0.01 0.02 0.01 0.00 0.00 0.76 0.65 0.78 0.81
O4' 0.00 0.02 0.01 0.01 0.00 0.00 0.00 0.00 0.01 0.01 0.01 0.03 0.01 0.03 0.00 0.00 0.28 0.33 0.01 0.23
O5' 0.31 0.49 0.20 0.14 0.73 0.01 0.81 0.00 0.75 0.54 0.60 0.35 0.00 0.14 0.76 0.28 0.00 0.01 0.01 0.00
OP1 0.31 0.39 0.19 0.16 0.62 0.17 0.72 0.27 0.64 0.45 0.48 0.26 0.06 0.08 0.65 0.33 0.01 0.00 0.00 0.00
OP2 0.14 0.41 0.15 0.08 0.71 0.18 0.74 0.34 0.57 0.38 0.57 0.31 0.00 0.08 0.78 0.01 0.01 0.00 0.00 0.00
P 0.28 0.48 0.18 0.13 0.76 0.01 0.83 0.00 0.72 0.50 0.61 0.35 0.01 0.11 0.81 0.23 0.00 0.00 0.00 0.00