sequences=12
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1YJW-01319-01317
X
>3CCS-01319-01317
X
>3G6E-01319-01317
X
>3CCL-01319-01317
X
>1VQO-01319-01317
X
>1VQ7-01319-01317
X
>1JJ2-01319-01317
X
>1S72-01319-01317
X
>3CC2-01319-01317
X
>3CCQ-01319-01317
X
>1NJI-A1319-A1317
X
>1FFK-01272-01270
X
</seq>
<hsp>
0 1:0.459347603233
0 2:0.855266425992
0 3:0.743966593853
0 4:0.866793588479
0 5:0.789104944188
0 6:1.0
0 7:0.975069724548
0 8:0.84762375177
0 9:0.708112843898
0 10:0.847339995751
0 11:0.802594371603
1 2:0.492460464515
1 3:0.498866885597
1 4:0.545183677897
1 5:0.469792645767
1 6:0.665857394642
1 7:0.64497764902
1 8:0.551716253037
1 9:0.441415702549
1 10:0.536927747663
1 11:0.526851291238
2 3:0.302388320694
2 4:0.216531826108
2 5:0.199353750462
2 6:0.22792632224
2 7:0.206771709253
2 8:0.209934884735
2 9:0.335006873371
2 10:0.303846954936
2 11:0.292497854534
3 4:0.296386452484
3 5:0.24959939548
3 6:0.31411215029
3 7:0.300917616703
3 8:0.184439467219
3 9:0.242552589449
3 10:0.279632596012
3 11:0.208713091407
4 5:0.172336933513
4 6:0.222986398459
4 7:0.197053356164
4 8:0.184534518178
4 9:0.416430238035
4 10:0.317794469699
4 11:0.169506537573
5 6:0.248506159592
5 7:0.226668348085
5 8:0.159581220408
5 9:0.384239517958
5 10:0.360090651553
5 11:0.152579197769
6 7:0.0384414995039
6 8:0.178370614675
6 9:0.437646274866
6 10:0.351179278174
6 11:0.264292569742
7 8:0.158428768492
7 9:0.42346204776
7 10:0.340703952778
7 11:0.246169433982
8 9:0.355491539868
8 10:0.292574159271
8 11:0.14693716296
9 10:0.257780219814
9 11:0.38983688133
10 11:0.322727360036
</hsp>