sequences=12
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3KNI-A431-A430
X
>3KNI-A173-A172
X
>3BNP-B6-B5
X
>2QA4-01985-01984
X
>3R8S-A2167-A2166
X
>1QU3-T64-T63
X
>2ZJR-X2596-X2595
X
>3F1E-A716-A715
X
>3F1G-A716-A715
X
>2J00-A716-A715
X
>2J02-A716-A715
X
>1M5V-B15-B14
X
</seq>
<hsp>
0 1:0.40113440074
0 2:0.156512650711
0 3:0.284310423211
0 4:0.998519103344
0 5:0.203897558012
0 6:0.180661081506
0 7:0.207354957925
0 8:0.203114559983
0 9:0.306815420008
0 10:0.307577031428
0 11:0.248438350187
1 2:0.359336238967
1 3:0.18416445565
1 4:0.99963077453
1 5:0.499388722086
1 6:0.243457370457
1 7:0.251988546461
1 8:0.251909446989
1 9:0.190065670145
1 10:0.183386926559
1 11:0.531715545254
2 3:0.216968105868
2 4:0.96438804401
2 5:0.175143061123
2 6:0.206372475714
2 7:0.196569227615
2 8:0.191308782105
2 9:0.269288807069
2 10:0.273403422749
2 11:0.328666244852
3 4:0.990407252463
3 5:0.380312585315
3 6:0.19355337382
3 7:0.14105459272
3 8:0.1430919471
3 9:0.150499799266
3 10:0.14696039531
3 11:0.465022601453
4 5:0.953348241581
4 6:0.9999987044
4 7:0.972548888835
4 8:0.963560973449
4 9:0.960826765221
4 10:0.965829582632
4 11:0.967279729748
5 6:0.306482564491
5 7:0.319305996954
5 8:0.311903908044
5 9:0.388021795328
5 10:0.394370288613
5 11:0.253483229208
6 7:0.139326419239
6 8:0.134671975338
6 9:0.188388942016
6 10:0.184878523185
6 11:0.319734962876
7 8:0.0156240673803
7 9:0.118007956029
7 10:0.118764180652
7 11:0.377033857594
8 9:0.115865665213
8 10:0.116872770663
8 11:0.366752883802
9 10:0.0193592177542
9 11:0.429765881703
10 11:0.430588294432
</hsp>