sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3R8T-A586-A585
X
>3OH7-A1538-A1537
X
>3OH5-A1538-A1537
X
>3R8S-A586-A585
X
>3OHK-A1538-A1537
X
>3OHJ-A1538-A1537
X
>3F1H-A1616-A1615
X
>3F1F-A1616-A1615
X
</seq>
<hsp>
0 1:0.909726012801
0 2:0.909095579274
0 3:0.507641498708
0 4:0.814854517272
0 5:0.817112660611
0 6:0.831301896157
0 7:0.824947830225
1 2:0.0432744458632
1 3:1.0
1 4:0.223090608504
1 5:0.239075359208
1 6:0.459048224518
1 7:0.460806402974
2 3:0.998067099897
2 4:0.232943186035
2 5:0.248485435462
2 6:0.459617297437
2 7:0.459431767863
3 4:0.900072779469
3 5:0.893872356216
3 6:0.786510711492
3 7:0.767033508608
4 5:0.0824128007399
4 6:0.408779580345
4 7:0.411487420534
5 6:0.386338719648
5 7:0.392801035173
6 7:0.0440741744064
</hsp>