sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3KNK-A1537-A1536
X
>3R8O-V73-V72
X
>3F1H-A605-A604
X
>3F1F-A605-A604
X
>3OI1-A1538-A1537
X
>3OHZ-A1538-A1537
X
>2J03-A1538-A1537
X
>2J01-A1538-A1537
X
</seq>
<hsp>
0 1:0.979120422985
0 2:0.368055782786
0 3:0.373350742886
0 4:0.24173286077
0 5:0.234816890713
0 6:0.309221333491
0 7:0.303992849031
1 2:0.999999942032
1 3:0.998719196919
1 4:0.965476677696
1 5:0.961223782509
1 6:0.891133712947
1 7:0.897566990778
2 3:0.0116274178243
2 4:0.229918669897
2 5:0.226671173542
2 6:0.285639498523
2 7:0.279149613388
3 4:0.233195553313
3 5:0.229913150291
3 6:0.287406161674
3 7:0.281101234345
4 5:0.0198042728563
4 6:0.190254865214
4 7:0.185751046728
5 6:0.179943435604
5 7:0.175072375732
6 7:0.0120800891974
</hsp>