sequences=6
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3CMA-02050-02049
X
>3I56-02050-02049
X
>3CME-02050-02049
X
>1YHQ-02050-02049
X
>3CC2-02050-02049
X
>2ZH2-B33-B32
X
</seq>
<hsp>
0 1:0.502110839305
0 2:0.307752646745
0 3:0.386465606036
0 4:0.423407942281
0 5:0.855749527505
1 2:0.567197828102
1 3:0.229279533992
1 4:0.236169275216
1 5:0.614663639408
2 3:0.567186482105
2 4:0.596036704693
2 5:0.999998534217
3 4:0.10716730532
3 5:0.550654979338
4 5:0.537346427311
</hsp>