sequences=15
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3CCR-959-958
X
>3R8T-A2786-A2785
X
>2UXC-A1016-A1015
X
>3U5D-12736-12735
X
>3R8O-A737-A736
X
>3R8N-A1280-A1279
X
>3U5H-52737-52736
X
>3R8O-A1280-A1279
X
>2QA4-02733-02732
X
>2VQE-A1139-A1138
X
>2VQE-A1016-A1015
X
>3KNI-A501-A500
X
>3KNK-A1154-A1153
X
>6TNA-A60-A59
X
>1I9V-A60-A59
X
</seq>
<hsp>
0 1:0.204594422683
0 2:0.159739728374
0 3:0.993373768368
0 4:0.0375185222181
0 5:0.753106336305
0 6:0.85815946203
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1 13:0.718573616075
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12 14:0.693608122848
13 14:0.0710305887844
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