sequences=11
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3OGY-A1312-A1311
X
>3OGE-A1312-A1311
X
>1XMQ-A1269-A1268
X
>2J02-A1312-A1311
X
>2J00-A1312-A1311
X
>1FJG-A1274-A1273
X
>1N32-A1274-A1273
X
>2UUB-A1274-A1273
X
>3F1E-A1274-A1273
X
>3F1G-A1274-A1273
X
>2VQE-A1274-A1273
X
</seq>
<hsp>
0 1:0.00420808016027
0 2:0.911750684175
0 3:0.146729812236
0 4:0.144170745401
0 5:0.97281963842
0 6:0.955185851167
0 7:0.937155400808
0 8:0.864147486515
0 9:0.864807525822
0 10:0.996661488568
1 2:0.915093217983
1 3:0.148746647053
1 4:0.146247479354
1 5:0.976149893928
1 6:0.958530008142
1 7:0.940472431921
1 8:0.867456432881
1 9:0.868128748519
1 10:1.0
2 3:0.810072022826
2 4:0.80914678159
2 5:0.0710574194824
2 6:0.0532761738422
2 7:0.0437645209004
2 8:0.0957093019314
2 9:0.0953300968957
2 10:0.105911460051
3 4:0.00588108822226
3 5:0.872428371316
3 6:0.854519590633
3 7:0.836165288293
3 8:0.766035543114
3 9:0.76714496281
3 10:0.898255285996
4 5:0.87139128514
4 6:0.853483888234
4 7:0.835135696712
4 8:0.76474941281
4 9:0.76583145479
4 10:0.897081203783
5 6:0.0254738358246
5 7:0.0445946906721
5 8:0.132500617626
5 9:0.132178726119
5 10:0.0482461693776
6 7:0.0267864113582
6 8:0.116490704422
6 9:0.115963947041
6 10:0.0590356324132
7 8:0.0939730798784
7 9:0.0941205558809
7 10:0.0687087118779
8 9:0.00809806317741
8 10:0.140737418324
9 10:0.140262143451
</hsp>