sequences=11
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3KNK-A2404-A2403
X
>1TTT-D60-D59
X
>1TTT-F60-F59
X
>3ADD-D11-D43
X
>1TTT-E60-E59
X
>2J03-A1239-A1238
X
>2J01-A1239-A1238
X
>1GID-A108-A106
X
>3KNI-A2778-A2777
X
>3KNH-A206-A205
X
>3R8T-A1610-A1608
X
</seq>
<hsp>
0 1:0.619273417401
0 2:0.607777930063
0 3:0.359052831339
0 4:0.600339401628
0 5:0.336885877921
0 6:0.334529787518
0 7:0.385120760756
0 8:0.278917286995
0 9:0.338588177561
0 10:0.798630841694
1 2:0.0502025411789
1 3:0.837529849005
1 4:0.0348429755986
1 5:0.801106755897
1 6:0.799237147847
1 7:0.816817729381
1 8:0.681133466327
1 9:0.76893680651
1 10:0.999999869123
2 3:0.817126352979
2 4:0.0524131296272
2 5:0.782880807565
2 6:0.780989022787
2 7:0.797615880546
2 8:0.66636492037
2 9:0.750310860734
2 10:0.97978258513
3 4:0.812043480038
3 5:0.167218467662
3 6:0.164467017251
3 7:0.135097578021
3 8:0.27083532109
3 9:0.162466876644
3 10:0.5302958972
4 5:0.774953404209
4 6:0.772967995107
4 7:0.788862328412
4 8:0.65507468732
4 9:0.740719908194
4 10:0.972893590445
5 6:0.0085160602295
5 7:0.0956582184471
5 8:0.192092890852
5 9:0.0908335922603
5 10:0.604739957211
6 7:0.0923847357477
6 8:0.190994048985
6 9:0.085720238517
6 10:0.60294898706
7 8:0.220387543659
7 9:0.0737380025834
7 10:0.518883295155
8 9:0.200983895516
8 10:0.620809222317
9 10:0.564836976534
</hsp>