sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2UUB-A1312-A1311
X
>3F1E-A1312-A1311
X
>3F1G-A1312-A1311
X
>2VQE-A1312-A1311
X
>1XMQ-A1307-A1306
X
>2UXC-A1312-A1311
X
>2VQF-A1312-A1311
X
>1FJG-A1312-A1311
X
</seq>
<hsp>
0 1:0.524237637893
0 2:0.530507361422
0 3:0.246260546741
0 4:0.204771694331
0 5:0.179842593305
0 6:0.419907608058
0 7:0.523399276124
1 2:0.0176544855184
1 3:0.750401955113
1 4:0.519507136285
1 5:0.627663757386
1 6:0.854852434151
1 7:0.99462253284
2 3:0.75617669922
2 4:0.523448601915
2 5:0.633726851747
2 6:0.860230215726
2 7:1.0
3 4:0.303559431512
3 5:0.17231130983
3 6:0.298897474509
3 7:0.376930629777
4 5:0.180435065242
4 6:0.381683467524
4 7:0.544239928495
5 6:0.302336956186
5 7:0.419321155546
6 7:0.259486043024
</hsp>