sequences=18
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3CMA-0620-0618
X
>1VQP-0620-0618
X
>3CCS-0620-0618
X
>1VQL-0620-0618
X
>3U5H-5599-5597
X
>1YHQ-0620-0618
X
>1YJ9-0620-0618
X
>1YIJ-0620-0618
X
>1VQ7-0620-0618
X
>1YJW-0620-0618
X
>3CCV-0620-0618
X
>1VQ5-0620-0618
X
>1Q86-A620-A618
X
>3CC4-0620-0618
X
>3I56-0620-0618
X
>1VQ6-0620-0618
X
>3CCU-0620-0618
X
>1NJI-A620-A618
X
</seq>
<hsp>
0 1:0.16101993918
0 2:0.257830749783
0 3:0.185965232586
0 4:0.812905691126
0 5:0.221241047832
0 6:0.32367155741
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16 17:0.120635872821
</hsp>