sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1YJ9-01120-01150
X
>2OTL-01120-01150
X
>2QEX-01120-01150
X
>1YJW-01120-01150
X
>1VQ4-01120-01150
X
>1VQ8-01120-01150
X
>1VQO-01120-01150
X
>1M90-A1120-A1150
X
>1NJI-A1120-A1150
X
>1JJ2-01120-01150
X
</seq>
<hsp>
0 1:0.257906770267
0 2:0.703850292387
0 3:0.812726810559
0 4:0.236665061311
0 5:0.635469994834
0 6:0.999978943841
0 7:0.997422313524
0 8:0.981238562387
0 9:0.890637214819
1 2:0.545634071391
1 3:0.685309607676
1 4:0.136645216597
1 5:0.738083704236
1 6:0.891483273094
1 7:0.905823641912
1 8:0.893360795302
1 9:0.817719194607
2 3:0.48016183686
2 4:0.571301373403
2 5:0.860192591568
2 6:0.552254527071
2 7:0.684503357402
2 8:0.701997698353
2 9:0.683764820817
3 4:0.724384806409
3 5:0.707959779545
3 6:0.408947655106
3 7:0.480471312126
3 8:0.535294299593
3 9:0.54574925699
4 5:0.69775789715
4 6:0.931553450918
4 7:0.882529281071
4 8:0.860491040346
4 9:0.773862852844
5 6:0.830075516932
5 7:0.774785173934
5 8:0.769744635306
5 9:0.705902948709
6 7:0.685101480527
6 8:0.736775213919
6 9:0.783876418104
7 8:0.0942797125507
7 9:0.183884319931
8 9:0.130119730225
</hsp>