sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3RKF-A24-A23
X
>3RKF-B24-B23
X
>3R8S-A1639-A1638
X
>3RKF-C24-C23
X
>3RKF-D24-D23
X
>1VQ5-02268-02267
X
>3CC2-02268-02267
X
>1M90-A2268-A2267
X
>1FG0-A259-A258
X
>1FFK-02221-02220
X
</seq>
<hsp>
0 1:0.262074708085
0 2:0.894188553373
0 3:0.371005091349
0 4:0.171276420604
0 5:0.829899967916
0 6:0.849173596231
0 7:0.85981895709
0 8:0.982282216302
0 9:0.84991724985
1 2:0.809883528432
1 3:0.224372461079
1 4:0.235796151788
1 5:0.839270237424
1 6:0.849294305599
1 7:0.872395577831
1 8:0.985465377358
1 9:0.856322351668
2 3:0.802061326528
2 4:0.927658058552
2 5:0.79037783389
2 6:0.755597539723
2 7:0.791143132238
2 8:0.831964011331
2 9:0.785035562099
3 4:0.376547976068
3 5:0.87164720092
3 6:0.879891705339
3 7:0.900384184712
3 8:0.999995673546
3 9:0.869415440462
4 5:0.788518977037
4 6:0.809488923401
4 7:0.825788719253
4 8:0.942076081711
4 9:0.806664189514
5 6:0.0603112697963
5 7:0.0663890728015
5 8:0.176015473625
5 9:0.105917245382
6 7:0.0635343974038
6 8:0.151144186926
6 9:0.102886348794
7 8:0.146029727034
7 9:0.11759375607
8 9:0.1446044218
</hsp>