sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3KNI-A1179-A1178
X
>3KNK-A1178-A1177
X
>2NUF-C12-C11
X
>1Q86-A1822-A1821
X
>2OTL-01822-01821
X
>1YI2-01822-01821
X
>2UUB-A1005-A1004
X
>2NUF-D12-D11
X
>1N32-A871-A870
X
</seq>
<hsp>
0 1:0.377874719022
0 2:0.903040152775
0 3:0.89306736852
0 4:0.84024343297
0 5:1.0
0 6:0.768829017596
0 7:0.840104062565
0 8:0.955630350235
1 2:0.556390133555
1 3:0.589397780337
1 4:0.52770940658
1 5:0.679076572103
1 6:0.510483247164
1 7:0.53958910342
1 8:0.632945704853
2 3:0.46611303441
2 4:0.426350917619
2 5:0.463126021093
2 6:0.519130130311
2 7:0.509106466796
2 8:0.527316993994
3 4:0.111196240039
3 5:0.208442355567
3 6:0.636654842797
3 7:0.41047731919
3 8:0.341972730895
4 5:0.205447713421
4 6:0.56882469303
4 7:0.355692390041
4 8:0.330162638913
5 6:0.57590921879
5 7:0.348232497896
5 8:0.290560632138
6 7:0.474826635125
6 8:0.61280408689
7 8:0.350989769526
</hsp>