sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3CCJ-0715-0714
X
>3CCS-0715-0714
X
>3BT7-C1-C0
X
>3CCR-0715-0714
X
>2RFK-E8-E7
X
>3KNH-A1043-A1042
X
>2OTJ-0946-0945
X
>3KNI-A635-A634
X
>2J02-A1481-A1480
X
</seq>
<hsp>
0 1:0.298745704755
0 2:0.828956628426
0 3:0.279613728558
0 4:0.963356180783
0 5:0.786030321755
0 6:0.999996381997
0 7:0.831190585084
0 8:0.619389266791
1 2:0.616365671685
1 3:0.0866568919568
1 4:0.750480794464
1 5:0.549666138003
1 6:0.822981302426
1 7:0.703704838297
1 8:0.464736697448
2 3:0.59602388231
2 4:0.292547850647
2 5:0.323732798927
2 6:0.36613262495
2 7:0.436380271568
2 8:0.406913583976
3 4:0.718686666971
3 5:0.528394376045
3 6:0.78201807336
3 7:0.658521507589
3 8:0.420053186897
4 5:0.281202968119
4 6:0.202941328033
4 7:0.380741489369
4 8:0.446154952704
5 6:0.352994871191
5 7:0.374920300247
5 8:0.284264552916
6 7:0.282570178514
6 8:0.432867781724
7 8:0.302295656621
</hsp>