sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3G78-A228-A227
X
>1VFG-C9-C8
X
>3G8T-E5-E4
X
>3KNH-Y72-Y71
X
>1IVS-C65-C64
X
>2ZJR-X1430-X1429
X
>3P59-D4-D3
X
>1GAX-C65-C64
X
</seq>
<hsp>
0 1:0.384735729967
0 2:0.307028449137
0 3:0.646188974419
0 4:0.0973340470599
0 5:0.410512636322
0 6:0.439857424595
0 7:0.219644192085
1 2:0.279247345101
1 3:0.547341652203
1 4:0.392950549891
1 5:0.519771959806
1 6:0.622284286691
1 7:0.312036757983
2 3:0.404334392701
2 4:0.349252171915
2 5:0.429196152747
2 6:0.627021209536
2 7:0.329588521104
3 4:0.698803609174
3 5:0.745254237838
3 6:1.0
3 7:0.667590258892
4 5:0.361382824268
4 6:0.373126007505
4 7:0.157388193034
5 6:0.364816181832
5 7:0.311778272499
6 7:0.39461584726
</hsp>