sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3KNK-A2415-A2414
X
>3KNK-A2273-A2272
X
>3CCJ-0421-0420
X
>3OI0-A521-A520
X
>3KNK-B92-B91
X
>3OHY-A91-A90
X
>3OI0-A91-A90
X
>2YDH-A43-A42
X
</seq>
<hsp>
0 1:0.558886539066
0 2:0.519234715352
0 3:0.401411096403
0 4:0.578763458025
0 5:0.575987445724
0 6:0.567626050503
0 7:0.471492623642
1 2:0.493192502435
1 3:0.664959350987
1 4:0.555204571743
1 5:1.0
1 6:0.995302202752
1 7:0.835140874086
2 3:0.369970881282
2 4:0.354581590408
2 5:0.716879133438
2 6:0.71329937069
2 7:0.653369512291
3 4:0.454816487023
3 5:0.375482017317
3 6:0.37536414454
3 7:0.361544092039
4 5:0.7835978943
4 6:0.785991425456
4 7:0.578057759514
5 6:0.0271960702012
5 7:0.379951951145
6 7:0.386120569489
</hsp>