sequences=16
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3OIJ-D6-D4
X
>3OIN-C6-C4
X
>3OIJ-C6-C4
X
>3G4M-A35-A34
X
>3GES-A35-A34
X
>3GAO-A35-A34
X
>3DIZ-A151-A150
X
>2B57-A34-A33
X
>1Y26-X37-X36
X
>3DIX-A151-A150
X
>3DJ2-A151-A150
X
>2VQF-A356-A355
X
>2J02-A356-A355
X
>2J00-A356-A355
X
>3DIM-A151-A150
X
>1FJG-A356-A355
X
</seq>
<hsp>
0 1:0.0489469350227
0 2:0.0602027856147
0 3:0.952472498307
0 4:0.928438737635
0 5:0.935611280566
0 6:0.890658603999
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1 15:0.999999959289
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8 9:0.301937980012
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8 11:0.867456201987
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12 13:0.00739357542143
12 14:0.70928498761
12 15:0.0539048539016
13 14:0.709962283801
13 15:0.0523697305138
14 15:0.729587483183
</hsp>