sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3OH7-A2350-A2349
X
>3OH5-A2350-A2349
X
>3KNI-A2608-A2607
X
>3KNI-A2425-A2424
X
>3KNK-A2425-A2424
X
>3MUR-R46-R45
X
>3D2G-B35-B34
X
>2QA4-02395-02394
X
</seq>
<hsp>
0 1:0.0280738627834
0 2:0.570100188955
0 3:0.286031770171
0 4:0.129540407406
0 5:0.255069114806
0 6:0.951267214255
0 7:0.155833779902
1 2:0.555336201635
1 3:0.267414493081
1 4:0.123985083603
1 5:0.24345315162
1 6:0.938437676163
1 7:0.143745630092
2 3:0.54682751691
2 4:0.532383497392
2 5:0.389683214462
2 6:1.0
2 7:0.548793403896
3 4:0.268297058286
3 5:0.3689587836
3 6:0.857087353679
3 7:0.246358332239
4 5:0.229735483938
4 6:0.921466025386
4 7:0.154920281632
5 6:0.956053110395
5 7:0.22192408262
6 7:0.927369471889
</hsp>