sequences=7
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3F1F-B42-B39
X
>3F1H-B42-B39
X
>3R8S-A2378-A2317
X
>3PDR-A116-A114
X
>3PDR-X116-X114
X
>3U5H-875-873
X
>2ZY6-A14-A12
X
</seq>
<hsp>
0 1:0.00575987108048
0 2:0.817727311894
0 3:0.714189331508
0 4:0.676706630195
0 5:0.764502728262
0 6:0.655087174671
1 2:0.818362149708
1 3:0.714802881868
1 4:0.677190200973
1 5:0.764884923298
1 6:0.655443973488
2 3:0.548146024925
2 4:0.607339404192
2 5:0.978588583745
2 6:0.568605993467
3 4:0.0729158514248
3 5:0.994622246573
3 6:0.138191424339
4 5:1.0
4 6:0.141588915675
5 6:0.894482065148
</hsp>