sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3CME-0112-0100
X
>2QA4-0112-0100
X
>1YJN-0112-0100
X
>1VQM-0112-0100
X
>3U5H-565-5312
X
>3F1F-A120-A107
X
>3F1H-A120-A107
X
>3U5D-165-1312
X
>1F7Y-B47-B45
X
>1DK1-B47-B45
X
</seq>
<hsp>
0 1:0.0601529121246
0 2:0.0843912721189
0 3:0.0459169154666
0 4:0.544502870145
0 5:0.118483301972
0 6:0.122443921458
0 7:0.512658997374
0 8:0.979461150714
0 9:0.975515719219
1 2:0.0825893172792
1 3:0.0656903695419
1 4:0.573622436682
1 5:0.0909087759982
1 6:0.0959630567568
1 7:0.542644477476
1 8:0.958509971248
1 9:0.95447001779
2 3:0.0418923426764
2 4:0.588193995159
2 5:0.0884838482748
2 6:0.087526674095
2 7:0.556889337157
2 8:1.0
2 9:0.996206408109
3 4:0.56272626493
3 5:0.104211742406
3 6:0.10591598293
3 7:0.530792839289
3 8:0.993275312543
3 9:0.989455544391
4 5:0.595500699762
4 6:0.596902908555
4 7:0.0410701169674
4 8:0.814230664492
4 9:0.810412672466
5 6:0.00920567989405
5 7:0.565585808305
5 8:0.959642164227
5 9:0.955577434347
6 7:0.567065061013
6 8:0.960704143595
6 9:0.956621275212
7 8:0.833442704723
7 9:0.829690352028
8 9:0.011018112822
</hsp>