sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3U5H-51723-51643
X
>1VQO-0949-0946
X
>3CMA-0949-0946
X
>1VQL-0949-0946
X
>3CME-0949-0946
X
>1VQM-0949-0946
X
>1VQK-0949-0946
X
>1VQ9-0949-0946
X
>1N32-A1109-A1106
X
</seq>
<hsp>
0 1:0.613465643789
0 2:0.668540294843
0 3:0.644652068684
0 4:0.625798887393
0 5:0.615285563766
0 6:0.603017645614
0 7:0.638711948801
0 8:0.999992582302
1 2:0.0809140415489
1 3:0.0440894886769
1 4:0.0713303623823
1 5:0.037142902892
1 6:0.0342468013228
1 7:0.0520278651072
1 8:0.873433817018
2 3:0.0473331580015
2 4:0.0631387552036
2 5:0.0763478705819
2 6:0.0783335709193
2 7:0.0605831511381
2 8:0.914427444185
3 4:0.068880498275
3 5:0.0379002869585
3 6:0.0458161965072
3 7:0.0409716944333
3 8:0.886047612505
4 5:0.0674240677582
4 6:0.0609258733747
4 7:0.0635045938969
4 8:0.897349013505
5 6:0.0233080657607
5 7:0.046670804821
5 8:0.863769012382
6 7:0.0447271059853
6 8:0.876049792807
7 8:0.875065920668
</hsp>