sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3MXH-R36-R35
X
>3IRW-R36-R35
X
>3MUM-R36-R35
X
>3KNH-X74-X73
X
>2QBZ-X87-X86
X
>3EPH-E57-E55
X
>3U5D-1661-1695
X
>1U9S-A148-A145
X
</seq>
<hsp>
0 1:0.0525609574536
0 2:0.0496546549717
0 3:0.467406558127
0 4:0.410854387843
0 5:0.755367871632
0 6:0.41263607862
0 7:0.486082655745
1 2:0.0449293358088
1 3:0.489146272391
1 4:0.453784154059
1 5:0.723082475903
1 6:0.436290726811
1 7:0.464038857303
2 3:0.496263709577
2 4:0.428978287554
2 5:0.759710575199
2 6:0.452556382814
2 7:0.475949529883
3 4:0.519720971515
3 5:0.726108197748
3 6:0.328179399714
3 7:0.592781753661
4 5:0.999999832479
4 6:0.435979550974
4 7:0.697755485461
5 6:0.709182521452
5 7:0.500184554964
6 7:0.582457490343
</hsp>