sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3U5F-6621-6619
X
>3R8N-A523-A521
X
>2VQE-A503-A501
X
>3R8O-A523-A521
X
>2VQF-A503-A501
X
>2UXC-A503-A501
X
>2UUB-A503-A501
X
>1XMQ-A503-A501
X
</seq>
<hsp>
0 1:0.998023972982
0 2:0.976930020761
0 3:1.0
0 4:0.978153913476
0 5:0.986342702383
0 6:0.984621039287
0 7:0.971874060233
1 2:0.0913734339369
1 3:0.0927944821416
1 4:0.0966145501116
1 5:0.0989481778701
1 6:0.076590356708
1 7:0.0876473001968
2 3:0.0874691555177
2 4:0.05552353215
2 5:0.0731972980382
2 6:0.0577256728866
2 7:0.104797902952
3 4:0.0633956065316
3 5:0.0877425028935
3 6:0.0786527903414
3 7:0.133996286333
4 5:0.0882470726903
4 6:0.0562795102117
4 7:0.121235536981
5 6:0.0500961230716
5 7:0.0850150503444
6 7:0.0732568429757
</hsp>