sequences=7
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3F1H-A389-A388
X
>3F1F-A389-A388
X
>2ZJR-X2285-X2284
X
>2GIS-A46-A45
X
>3GX2-A46-A45
X
>3IQR-A46-A45
X
>3GX7-A46-A45
X
</seq>
<hsp>
0 1:0.0492653382067
0 2:0.951085652475
0 3:0.825890079517
0 4:0.950422311198
0 5:0.988979083264
0 6:0.932169218791
1 2:0.976300626651
1 3:0.84154704047
1 4:0.956129809381
1 5:0.999994526674
1 6:0.93911734347
2 3:0.796533117244
2 4:0.912807750888
2 5:0.6409295393
2 6:0.543322182846
3 4:0.736906843764
3 5:0.409388863457
3 6:0.576269002434
4 5:0.853016878294
4 6:0.643470088962
5 6:0.390111231124
</hsp>