sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3F1F-A2806-A2804
X
>3F1H-A2806-A2804
X
>3F1E-A574-A573
X
>3R8S-A2415-A2384
X
>3F1G-A574-A573
X
>3DIY-A111-A109
X
>3DIO-X111-X109
X
>3D2V-A61-A59
X
</seq>
<hsp>
0 1:0.00459474745388
0 2:0.865886406191
0 3:0.773184049745
0 4:0.864649320944
0 5:0.496058932128
0 6:0.473209833555
0 7:0.608896997031
1 2:0.865329099894
1 3:0.773622897479
1 4:0.864159939412
1 5:0.496586390177
1 6:0.473752248815
1 7:0.608978742743
2 3:0.690556403492
2 4:0.00572189743353
2 5:0.922017357704
2 6:0.918293435314
2 7:0.742089453357
3 4:0.688205238485
3 5:1.0
3 6:0.997968000337
3 7:0.968574681803
4 5:0.918652916453
4 6:0.91499620368
4 7:0.740596075165
5 6:0.0326016281299
5 7:0.289317200727
6 7:0.296495992646
</hsp>