sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3KNK-A2145-A2143
X
>3U5B-2338-2336
X
>2VQE-A258-A256
X
>2VQF-A258-A256
X
>3F1G-A258-A256
X
>3F1E-A258-A256
X
>2UUB-A258-A256
X
>2UUA-A258-A256
X
</seq>
<hsp>
0 1:0.452633003547
0 2:1.0
0 3:0.926422795078
0 4:0.895352037294
0 5:0.895266513891
0 6:0.962374626857
0 7:0.953967345307
1 2:0.777217648763
1 3:0.742543174795
1 4:0.734821399698
1 5:0.733253762699
1 6:0.758899484921
1 7:0.754302837635
2 3:0.142607086544
2 4:0.199034577277
2 5:0.195969933823
2 6:0.0848369503019
2 7:0.10654517188
3 4:0.0904189698403
3 5:0.0890241745399
3 6:0.0884684978078
3 7:0.0708111868472
4 5:0.00667377867514
4 6:0.123151434243
4 7:0.111551578443
5 6:0.120055134037
5 7:0.108737356297
6 7:0.0338212213233
</hsp>